Fritz Sedlazeck

Sniffles. Structural variation caller using third generation sequencing

SURVIVOR. Toolset for SV simulation, comparison and filtering

Spectre. Copy number caller for long read data including SNV utilization

parliament2. Runs a combination of tools to generate structural variant calls on whole-genome sequencing data

SVCollector. Method to optimally select samples for validation and resequencing

nibSV. Kmer based genotyper for short reads.

SURVIVOR_ant. A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)

sge_mummer. Scripts to split reference and run mummer in parallel on an SGE cluster

BioBricks. A simple framework to simulate parental and admixture offsprings. The framework allows for a benchmark to distinguish inheritance blocks on the offsprings.

fritzsedlazeck.github.io. My lab github page

teaching_material. Collection of teaching instructions