A scientific programmer, technical writer, teacher and get-your-hands-dirty kind of engineer. Eager to create, eager to share!
iso2mesh. Iso2Mesh - a 3D surface and volumetric mesh generator for MATLAB/Octave
212mcx. Monte Carlo eXtreme (MCX) - Physically accurate and validated GPU ray-tracer
186mmc. Mesh-based Monte Carlo (MMC)
56mcxcl. Monte Carlo eXtreme for OpenCL (MCXCL)
47brain2mesh. Brain2Mesh - a one-liner for high-quality brain mesh generation
41redbird. Redbird - A Model-Based Diffuse Optical Imaging Toolbox
7easyh5. EasyH5 Toolbox - An easy-to-use HDF5 data interface (loadh5 and saveh5) for MATLAB
7meshfix. Meshfix 1.2-alpha by Marco Attene with Linux makefile
6gbff2json. GenBank GBFF File to JSON Converter
4blit. BLIT - a library of block (multiple-right-hand-side) iterative sparse linear solvers
4jdata. JData: a language-independent data annotation for portable storage and interchange
3jnifti. An extensible file format for storage of neuroimaging data:
3BlenderPhotonics. BlenderPhotonics is a Blender addon to perform 3D mesh generation and Monte Carlo simulations using Iso2Mesh and MMCLAB
3metch. Metch - a mesh/volume registration toolbox
3cork. 3D Boolean / CSG Library
2pysnirf2. Python package for reading, writing and validating Shared Near Infrared Spectroscopy Format (SNIRF) files
2jsnirf. A portable fNIRS data storage format
1jdai. JData Interface - a portable C-library to encode decode JData formatted files
1Homer3. MATLAB
1ubj. UBJSON C/C++ libraries
1jsdata. JData encoder and decoder for JavaScript
1MC_Project. Files required for MC calculations
1pyjdata. JData encoder and decoder for Python
1jsnirfy. JSNIRF Toolbox
1sm-fpca. MATLAB implementation of Smooth Manifold FPCA (SM-FPCA)
1zmat. ZMat: A portable C-library and MATLAB/Octave/Python toolbox for zlib/gzip/lzma/lz4/zstd/blosc2 data compression
1MatrixLib. Lightweight header-only matrix library (C++) for numerical optimization and machine learning. Contact me if there is an exciting opportunity.
1miss_hit. MATLAB Independent, Small & Safe, High Integrity Tools - code formatter and more
1habitat. Habitat Organic Wiki
1GPU-ANLM. GPU-ANLM
1pybj. Binary JSON (BJData/UBJSON) Support for Python
1tensorflow_basics. Jupyter Notebook
1brainstorm3. Brainstorm software: MEG, EEG, fNIRS, ECoG, sEEG and electrophysiology
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