Erick Armingol

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@earmingol

Chilean - PhD in Bioinformatics & Systems Biology from UC San Diego - Postdoc at the Wellcome Sanger Institute

cell2cell. User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

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scCellFie. scCellFie infers metabolic activities from single-cell and spatial transcriptomics and offers a variety of downstream analyses.

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DOTpy. Python implementation of DOT, a label transferring tool for spatial transcriptomics

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singlecell-ccc. Docker image for running cell-cell communication analyses

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SARS-Human-DERank. PageRank-based search of important human genes for viral infection

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Microbiome-Factorization. Examples of using PhyloFactor and DEICODE to analyze microbiome datasets.

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earmingol.github.io. HTML

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awesome-machine-learning. A curated list of awesome Machine Learning frameworks, libraries and software.

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Guitar. Codes for helping to learn playing guitar

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cobra_utils. Utility to simplify obtaining information from genome-scale models as well as their manipulation. This implementation is available only for working with COBRApy.

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