Daniel Zerbino

velvet. Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18: 821-829

ascii_plots. Convenience function for quick and dirty data analysis

oases. De novo transcriptome assembler for short reads

WiggleTools. Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency

pyAVG. AVG sampler prototype

cn-avg. Copy Number AVG pipeline for the analysis of NGS Cancer data

QuantumPong. Pong with Quantum mechanics