No. 1, Beichen West Road, Chaoyang District, Beijing

Dengfeng Guan

Expert
@dfguan

Postdoc at Zoology Institute, China Academy of Sciences. Interested in algorithmic design and evolutionary genomics.

www.chatlink.com.cn

purge_dups. haplotypic duplication identification tool

293

asset. assembly evaluation tool

35

pin_hic. A Hi-C scaffolding method

22

rHAT. Pacbio sequence alignment tool, please use "git clone" to copy and use the repository

18

deSPI. fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing

10

cgplot. comparative genome dot plot viewer

9

KMC. Fast and frugal disk based k-mer counter

6

pins. scaffolding based on Hi-C, 10X linked reads, linkage disequilibrium information.

5

satool. SAT format management tool

4

vcpipe. variant calling pipeline for cicilid fish

3

runner. High Performance Cluster (HPC) runner

3

asset-prev. assembly evaluation tool

2

dot. Dot: An interactive dot plot viewer for comparative genomics

2

docs. Slides and Poster and maybe some others

1

kmer-cnt. Code examples of fast and simple k-mer counters for tutorial purposes

1

arima_mapping. This is a python script of arima_mapping pipeline refer to: https://github.com/ArimaGenomics/mapping_pipeline

1
16
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