Constantin

ggsignif. Easily add significance brackets to your ggplots

ggupset. Combination matrix axis for 'ggplot2' to create 'UpSet' plots

glmGamPoi. Fit Gamma-Poisson Generalized Linear Models Reliably

tidygenomics. Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/

lemur. Latent Embedding Multivariate Regression

linear_perturbation_prediction-Paper. HTML

sparseMatrixStats. Implementation of the matrixStats API for sparse matrices

transformGamPoi-Paper. HTML

pyLemur. A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.

proDA. Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/

transformGamPoi. Variance stabilizing transformation for Gamma Poisson distributed data

exactplot. Produce scientific figures in R that look exactly how you want

mixdir. Cluster high dimensional categorical datasets

Neural_Network_DNA_Demo. Jupyter Notebook to demonstrate the use of Neural Networks for Transcription Factor Binding Site Prediction

einsum. Einstein Summation for Arrays in R

treelabel. Store and work with labels that exist in hierarchical relationships

CoefExplainer. Understand How to Interpret the Coefficients of a Categorical Linear Model

motif_plotter. A simple tool to create DNA motif plots based directly on matplotlib to enable construction of complex plots

CoronaDensity. HTML

ggbezier. Bezier curves for 'ggplot2'

proDD. Differential Detection for Label-free (LFQ) Mass Spec Data

ggquadrilateral. A quadrilateral geom for ggplot2

ggplot2_basics_to_extensions. Material from my talk "ggplot2: whistlestop tour from basics to extensions" at the Oxford R User group meetup.

HighlyReplicatedRNASeq. Collection of Bulk RNA-Seq Experiments With Many Replicates

transformGamPoi-ShinyApp. Source code for the Shiny App of Comparison of Transformations for Single-Cell RNA-Seq Data

lemur-Paper. Code to reproduce analysis in LEMUR paper

gggroupedscale. Grouped Discrete Scale for 'ggplot2'

glmGamPoi-Paper. HTML

MyWorkflowManager. This is a simple self-written R workflow manager for slurm systems that I use to automate the submission of jobs

proDA-Paper. HTML

Multi-omics-Data-Integration-course. Temporary Repository for the EMBO 2024 Multi-Omics course

kmeansPoi. R package for K-means clustering of Counts

matrixStats. R package: Methods that Apply to Rows and Columns of Matrices (and to Vectors)