Chris Miller

fishplot. Create timecourse "fish plots" that show changes in the clonal architecture of tumors

readDepth. R package for inferring copy number from read depth

copyCat. a parallel R package for detecting copy-number alterations from short sequencing reads

rtm-cli. A command-line Remember the Milk client written in perl

docker-genomic-analysis. Basic docker image for ad-hoc genomic analyses

igvScreenshot. Create static screenshots of genomic regions using IGV.

commute-times. calculate drive times from multiple locations and visualize them in google earth

docker-phlat. dockerization of phlat hla typing tool

davidapi. A ruby wrapper for a few of the DAVID API functions for functional gene annotation (http://david.abcc.ncifcrf.gov/)

docker-R-singlecell. tools for single-cell RNAseq analysis

bioinfoSnippets. Short snippets of code useful for bioinformatics and genomics

iTunes-to-Guayadeque. copies song ratings from iTunes to Guaydeque music player

docker-meme. docker image for the MEME package (http://meme.ebi.edu.au/)

RMEmod. A tool for discovering functional modules by identifying recurrent and mutually exclusive mutational patterns in tumors