Camille Scott

cookiecutter-cppyy-cmake. A cookiecutter template for using cppyy to generate python bindings for c++ code

shmlast. blast, shmlast

oarr-compendium. Compendium of the "state of the art" in the philosophy and practice of Open Access and Reproducible Research

cppyy-bbhash. An example repo for generating python bindings with cppyy.

cppyy-knn. An example repo for packaging cppyy bindings for a simple k-nearest neighbors implementation, based on https://github.com/jclay/cppyy-knearestneighbors-example

ope. Run tools on FASTA files with gnu parallel, and then parse the results.

goetia. Streaming de Bruijn and Compact de Bruijn Graph Algorithms

ficus. A context manager for matplotlib figures.

zardoz. A discord bot with a focus on Rogue Trader. FEAR IT. Written in pure Python with discord.py.

debruijnal-enhance-o-tron. pytest fixtures for testing de Bruin Graphs

dotfiles. personal zsh config

joshua. HTML

tabs. Makefile

squidlet. A simple blast server

explotiv. JavaScript

similarity-matrix. for ashanti, or anyone who needs to make a quick similarity matrix out of a FASTA file

avida-modularity. Study on the evolution of genetic modularity in the absence of recombination

2015-fish-dna. Simple genome assembly of an African cichlid

2015-08-16-ucdavis-wise. HTML