Brian Hie

scanorama. Panoramic stitching of single cell data

efficient-evolution. Efficient evolution from protein language models

viral-mutation. Language modeling of viral evolution

geosketch. Geometry-preserving random sampling

evolocity. Evolutionary velocity with protein language models

uncertainty. Learning with uncertainty for biological discovery and design

trajectorama. Multi-study integration of cellular trajectories

secure-dti. Realizing private and practical pharmacological collaboration

mutational-semantics-neurips2020. Learning mutational semantics

syngenome. JavaScript

flash-attention. Fast and memory-efficient exact attention

brianhie.github.com. HTML

evovdss. Jupyter Notebook

scib. Benchmarking analysis of data integration tools

orf-fold-website. JavaScript

protein-sequence-embedding-iclr2019. Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019

DGraphDTA. a novel DTA predition method using graph neural network

tf-embed. Python

led-website. HTML

scanpy. Single-Cell Analysis in Python. Scales to >1M cells.

schema. Framework for integrating heterogeneous modalities of data