Bede Constantinides

hostile. Precise host read removal

deacon. Fast DNA search and [host] depletion using minimizers

claranet4. Python client for Aranet4 CO2 sensors

kindel. Indel-aware consensus for aligned BAM

tictax. Streaming sequence classification with web services ✓📌

seqsum. Robust individual and aggregate checksums for nucleotide sequences

konstel. Hash-based phonemic sequence identifiers

knownknowns. Reference coverage and depth estimation using k-mers

vespasian. Genome-scale detection of selective pressure variation

cryptocurrency-tools. Python

skope. Rust

workshop5. Python

zmrp. ZeptoMetrix Respiratory Panel 2.1 genome sequences

ExpressLRS-Configurator. Cross platform configuration & build tool for the ExpressLRS radio link

pyaranet4. A cross-platform Python interface for the Aranet4 CO₂ meter

fieldbioinformatics. The ARTIC field bioinformatics pipeline

artic-ncov2019. ARTIC nanopore protocol for nCoV2019 novel coronavirus

primer-schemes. Python

viridian_workflow. Python

bte-binder. A jupyter Binder repository containing documentation and example analyses for Big Tree Explorer (BTE)

primer-schemes-pvh. Primer schemes for real-time genome epidemiology

sars2-seq-eval. Evaluation of SARS-CoV-2 sequencing protocols

defoptmwe.

bede.github.io. HTML

velo. Jupyter Notebook

flanker. Gene-flank analysis tool

deacon-indexes. Workflows for building large Deacon indexes