Gelsenkirchen

Armin Töpfer

Advanced
@armintoepfer

Husband. Father. Computational biology PhD. Bioinformagician. Software Engineer & Senior Director. C++ Purist. Geek. Digital Artist. Photographer.

www.armintoepfer.com

bam-io-throughput. BAM I/O Throughput Benchmark

2

ggeyecandy. Various R scripts to generate appealing data visualizations

2

fastpool. C++

2

haploclique. Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.

2

solo. Modern web interface for controlling Sonos devices on your local network.

1

aligner-testbed. C++

1

split2del. Bioinformatics tool to merge split read alignments to reconstruct large deletions.

1

seqalfixer. SequenceAlignmentFixer, a multitude of alignment statistics and fixes for Next Generation Sequencing (NGS) data. Computes consensus sequence with in-frame deletions and insertions.

1

PrimerIDTK. Toolkit for PrimerID NGS experiments

1

QuasiViz. Visualisation of viral populations

1

profilesim. Creating profiles for SimSeq from BAM alignments and a set of reference genomes.

1

BAMExtract. Extracts regions from a bam file and exports as in sam format

1
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