Martin Larralde

InstaLooter. Another API-less Instagram pictures and videos downloader. (defunct)

ffpb. A progress bar for ffmpeg. Yay !

pronto. A Python frontend to (Open Biomedical) Ontologies.

pyrodigal. Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

pyhmmer. Cython bindings and Python interface to HMMER3.

peptides.py. Physicochemical properties, indices and descriptors for amino-acid sequences.

fs.sshfs. Pyfilesystem2 over SSH using paramiko

rich-msa. A Rich renderable for viewing Multiple Sequence Alignments in the terminal.

mini3di. A NumPy port of the foldseek code for encoding protein structures to 3di.

lightmotif. A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

pyfamsa. Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

pyorthoani. A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.

fs.smbfs. Pyfilesystem2 over SMB using pysmb

pyskani. PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.

pytrimal. Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!

pymuscle5. Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.

blanket. A simple Rust macro to derive blanket implementations for your traits.

pyaragorn. Cython bindings and Python interface to ARAGORN, a (t|mt|tm)RNA gene finder.

fs.expose. Python

property-cached. A (better) decorator for caching properties in classes (forked from cached-property).

flips.rs. Rust bindings to Flips, the Floating IPS patcher.

mininear. A NumPy port of the NEAR code for embedding protein sequences.

pyswrd. Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic method for fast database search.

lapucelle-textures. A PPSSPP texture pack for La Pucelle Ragnarok (english patched)

pruefung. Redundancy checks in pure Rust

pytantan. Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.

diced. A Rust reimplementation of the MinCED method for identifying CRISPRs in full or assembled genomes.

proteinogenic. Chemical structure generation for protein sequences as SMILES string.

opticaldisc. Read optical media filesystems with Rust

pyhcrf. A hidden conditional random field (HCRF) implementation in Python.

embedded-picofont. The PICO-8 font to use with embedded-graphics.

pycomsa. Cython bindings and Python interface to CoMSA, a compressor for multiple-sequence alignments.

lua-fix16. An experimental patch with fixed-point arithmetic support for Lua 5.3

annotate.Snakefile. A Snakemake pipeline to copy annotations between GenBank files

python-sortedcontainers. Python Sorted Container Types: Sorted List, Sorted Dict, and Sorted Set

kmachine. A toy compiler that produces Kappa code from Counter Machine instructions.

2ccng. Trains in 2 company colours (narrow-gauge edition)

rlinalg. Linear Algebra routines for Python as implemented in the R language.

smatrix. Not the slurm job dispatcher you need, but the one you deserve.