Asst Prof (NYU Center for Neural Science) and Project Leader (Flatiron Institute Center for Computational Neuroscience)
affinewarp. An implementation of piecewise linear time warping for multi-dimensional time series alignment
191Einsum.jl. Einstein summation notation in Julia
166netrep. Some methods for comparing network representations in deep learning and neuroscience.
145tensor-demo. A quickstart guide to tensor decomposition
73CatViews.jl. Concatenated Array views in Julia.
66tensortools. A very simple and barebones tensor decomposition library for CP decomposition a.k.a. PARAFAC a.k.a. TCA
39mit-tensor.
28PyNeuron-Toolbox. Some python functions to supplement the NEURON python module
28TimeWarp.jl. Dynamic Time Warping (DTW) and related algorithms in Julia
13HiddenMarkovModel.jl. A module for fitting Hidden Markov Models in Julia
9rnn_remapping_paper. Jupyter Notebook
4sinkdiv. Implementation of Sinkhorn Divergence Loss in Jax
4freedata. List of Open Access Neuroscience Datasets
2Williams-etal-Synaptic-Transport. Code and Supplementary Notes for Williams et al. (2016) "Dendritic trafficking faces physiologically critical speed-precision tradeoffs."
2nmftools. Tools for fitting NMF
2lvl. Python
2torch_convnmf. Pytorch implementation of convolutional matrix factorization
1ahwillia.github.com. JavaScript
1OptimizationBenchmarks.jl. Some benchmark optimization problems for testing new algorithms
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