M-x research-mode

org-tufte. Export org file to the beauty Tufte html

PCAone. Fast, Accurate and Memory-Efficient Principal Component Analysis All in One For Large-scale Dataset

vcfpp. a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.

vcfppR. The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049

BioScripts. Cool Bioinformatics Scripts

SVUPP. genotype Structural Variants Using Pre-Phased Reads

lcWGS-imputation-workflow. Imputation workflow for low coverage whole genome sequencing data

BaseVarC. The repo was not under active development. Check out angsd toolkit for low depth data analyses.

PCAoneR. Window based randomized singular value decomposition (winSVD)

phaseless. Imputation and Admixture for lcWGS in one goal

array-imputation-workflow. imputation workflow for array data using shapeit2 and impute2