Yasas Wijesekara

Jaeger. Jaeger is a quick and precise tool for detecting phages in sequence assemblies.

Skadi. SKADI: Sequence-based Knowledgebase for Annotation, Detection, and Identification

phage_contig_annotator. Annotates genes on putative phage contigs with protein orthologous groups using PHROGs

MGnify-assembly-downloader. Downloads all assemblies available on MGnify

lib-rtf. Return time frequency based virus genotype clustering/detection program

Yasas1994.

Clustering-significance-test. Permutation test for identification of statistically significant clusters in a phylogenetic tree

bioconda-recipes. Conda recipes for the bioconda channel.

download-and-reannotation-of-phage-genomes. A snakemake workflow for downloading and reannotating phage genomes

viroinf-hiddensee. Datasets for the ViroInf Hiddensee workshop

sequence_fragment_simulator. Python

PHANOTATE-rs. A fast Rust reimplementation of PHANOTATE