Tsjerk

Insane. INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems

Backward. Mapping from Coarse Grain Models to Atomistic (and Back)

MartiniTools. Python

Martinize. Martini Molecular Dynamics Tools

xtc. Light-weight processing of Gromacs' XTC trajectories

pdbsearch. Python powered search facilities for the RCSB protein databank

simopt. SIMple OPTion parser

Tipsi. Transition/Interface Path Sampler Identifier - A Gromacs-based TPS/TIS companion.

cello. A deeper, richer violinplot, showing how density covaries with additional variables

vesicle. Python

mdanalysis. MDAnalysis is a Python library to analyze molecular dynamics trajectories.

pecoc. Pattern-Encoded Color Order Correlations

gromacs. Public/backup repository of the gromacs molecular simulation toolkit