Sam Nicholls

reticulatus. A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads

chitin. chitin: an awful shell for awful bioinformaticians

majora2. Malleable All-seeing Journal Of Research Artifacts

naaaavi. Naming avoiding ambiguity automatically assigning valid identifiers

gretel. An algorithm for recovering haplotypes from metagenomes

hansel. A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence

goldilocks. Locating genetic regions that are "just right"

dehumanizer. rapidly rid reads of horrid humans

ocarina2. on-computer agent (for) remembering input actions

elan-nextflow. for data flowing to birmingham

book-notes.

ffurf. a very simple python package for defining and filling configurations

hootsim. Extensible agent-based model simulator written in C++

triage. A todo manager for the disaster that is your day

assert-changelog. Python

sunblock. Do not stare directly into the Sun Grid Engine

elan-ena-nextflow. Nextflow

dbot-stats. Statistics module for award winning depressionbot

gretel-test. Python

frontier-dissertation. Undergraduate Dissertation Project

pyena. a hilariously simple script to send raw reads to ena

blog. HTML

reticulatus-containers. a box to put snakes in

swell. Python

2018-01-23-samstudio8. Python

dotfiles-2.0. Things I need on my adventures against computers, deployed in a better way than last time

samstudio8.github.io.off. samstudio8.github.io

hootsim2000. A sequel to the extensible agent event based simulator, Hootsim

EulerFortran. First foray in to Fortran

frontier. Interfaces for the reading, storage and retrieval of large machine learning data sets for use with scikit-learn

IYG-Import. Python Data Importer for IYG Web

Mountain. A work in progress collection of simple but possibly useful genetics tools.

IYG-Web. "Inside Your Genome" Web App

IYG-Web-Lib. Perl Library for IYG Web