Computational Biology, Spatial Omics, Machine Learning
bark.cpp. Suno AI's Bark model in C/C++ for fast text-to-speech generation
866sam3.cpp. Fast state-of-the-art image and video segmentation in portable C/C++
340encodec.cpp. Fast neural codec compression and generation for audio waveforms
231WSIStreamer. A tile server for WSI stored in S3-compatible object storage.
181biogpt.cpp. Port of Microsoft's BioGPT in C/C++ using ggml
87nanograd. A torch-like lightweight deep learning framework around Numpy arrays
34PathCollab. A self-hosted collaborative digital pathology viewer with real-time cursor presence and overlays
31nanokv. A distributed key value store in ~1,000 lines of code.
28sparseglm. Fast and modular solver for sparse generalized linear models
8cs_notes_tips_tricks. A bunch of notes about CS, ML, networking that I usually learn on the job.
5NarrateMate.ai. TypeScript
4automatic_hp_selection_for_meg. Automatic hyperparameter selection for Lasso-like models solving the M/EEG source localization problem
4claude-telegram-bot. A Telegram bot to send and receive prompts to Claude Code.
4PathView. PathView is a high-performance whole-slide image viewer for digital pathology. PathView combines GPU-accelerated tiled rendering with polygon overlays for cell segmentation visualization and AI agent integration via the Model Context Protocol (MCP).
4spacexrfast. Fast, exact-preserving doublet-mode backend for spacexr RCTD. Up to 15× faster on Xenium, identical calls.
4MakeItPunchier. Make your tweets more punchy with Mixtral and GPT
3fgfr3mut. Official Implementation of the "AI allows pre-screening of FGFR3 mutational status using routine histology slides of muscle-invasive bladder cancer" paper
3rust-ggml. Rust bindings for C tensor library ggml
2inria_bilevel_optim. HTML
2learning_assembly. you find C hard? learn assembly then C will feel easy peasy
2pabannier.
2benchmark_multi_task_lasso. Benchopt benchmark for Multi-Task Lasso
1fast-melanoma-detection. A malignant melanoma classifier with deep learning deployed in a Streamlit web app
1Vector-field-visualizer. A simple tool to visualize a vector field written with Processing
1sinkhorn-swift. Benchmarking mask interpolation methods for real-time on-device video object segmentation on Apple Silicon. 11 methods compared (optical flow, optimal transport, baselines) across 30K+ evaluations — with Metal compute shaders, Apple Vision flow, and Sinkhorn OT.
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