Fabrizio Musacchio

GitHub_Flavor_Markdown_CSS. A GitHub flavored Markdown Style Sheet (CSS)

DEVONthink_Image_Toolbox. A collection of Applescripts for processing images in DEVONthink

Python_Course. This is the course material for the introductory course into Python basics for Data Scientists.

Python_Neuro_Practical. This is the course material for the advanced course into Python for Data Scientists.

DEVONthink_Generate_Markdown_TOC. Generates a table of contents and Back-to-top links in DEVONthink's Markdown documents.

neural_dynamics. A collection of educational Python script for Neural Dynamics

DEVONthink_Note_Graphs. Create and visualize dynamic link graphs of your Markdown notes in DEVONthink 3

fractals. This repository contains the code for the blog post on The Weistrass function and the beauty of fractals. For further details, please refer to this post.

Mastodon_powered_comments. This repository contains a HTML script including liquid commands and JavaScript, that integrates a Mastodon-powered comment system into a static website. The script is written in a way that it can be used with the static site generator Jekyll.

Napari_Bioimage_Analysis. Image data and Python scripts for the course on Bioimage analysis with Napari

dimensionality_reduction_in_neuroscience. Course material for "Dimensionality reduction in Neuroscience"

MotilA. Pipeline for analyzing microglial fine process motility from 4D/5D multi-photon imaging data

omio. OMIO is a Python library for reading, organizing, merging, visualizing, and exporting multidimensional microscopy image data under explicit OME-compliant axis and metadata semantics.

runge_kutta_methods. Python

Wasserstein_distance_demo. This repository contains the code for some blog posts on the Wasserstein metric. For further details, please refer to the corresponding posts.

hopfield_network. In this tutorial, we explore the mathematical underpinnings of Hebbian learning within Hopfield networks, emphasizing its role in pattern recognition.

functional_image_analysis_neuroscience. Material for the course on Functional Imaging Data Analysis in Neuroscience: From Calcium Signals to Population Dynamics

tdms-reader. A simple script to read TDMS files from a given directory, plot them and save them as csv files.

DeepLabCut_toolbox. Toolbox with script to analyze DeepLabCut animal behavior experiments

bio_image_registration. Scripts for evaluating common Python image registration methods

dimensionality_reduction. Code used in blog post about dimensionality reduction using Python

Random_Forest_vs_Decision_Tree. Code used in two blog posts on decision trees and random forests.

Lorenz_Attractor. This repository contains the code for the blog post on Solving the Lorenz system using Runge-Kutta methods. For further details, please refer to this post.

izhikevich_model. Python scripts supporting tutorials on Izhikevich neuron model.

Hodgkin-Huxley-Model. Python scripts supporting a tutorial on the Hodgkin-Huxley model.

Orbit. This repository contains the code for the blog post on Runge-Kutta methods for solving ODEs. For further details, please refer to this post.

entropy. This repository contains the code for the blog post on Understanding entropy. For further details, please refer to this post.

earth_magnetic_field. The code in this repository is modified after scipython.com. It plots Earth's dipolar magnetic field and was used in the blog post on Earth's dipolar magnetic field. For further details, please refer to this post.

fabriziomusacchio.