East Lansing, MI

Dan Chitwood

Expert
@DanChitwood

I use my experience in plant biology creatively and with purpose within computational and educational settings.

danchitwood.github.io/plants_and_python/

PlantsAndPython. Course material for the Foundation in Computational Plant Science course at Michigan State University

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PassifloraLeaves. Data and code used to produce figures for the morphometric analysis of Passiflora leaves

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Bio5702. Bio5702, Current Approaches in Plant Research, a graduate course at Washington Unviersity in St. Louis

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PlantsAndPython_2021. Class repository for 2021 Plants&Python

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MozartPCA. A principal component analysis of notes from the first movement of Mozart's Symphony No. 40

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coca_morphometrics. a repo for a manuscript on coca leaf morphometrics

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MIDIocre. Code and data for the manuscript "The evolution of Western tonality: a corpus analysis of 24,000 songs from 190 composers over six centuries"

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CropPhylogeny. An interactive D3 graphic showing phylogenetic relationships between the world's crop species. Circle sizes are proportional to production tonnes in 2011 (http://faostat.fao.org/).

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CaulerpaGeneExpression. An interactive graphic analyzing patterns of gene expression in Caulerpa taxifolia. The code is not exactly elegant, and the data set is large, so expect some unresponsiveness and a longer load time.

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Euler_characteristic_plant_shapes. A repository for code and data analyzing plant shapes using the Euler characteristic transform (ECT)

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coca_leaf_CNN. Disentangling Latent Genetic and Environmental Effects on Coca Leaf Shape using Deep Learning

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preliminary_ampelography. a repository for preliminary ampelography data

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matisse_test. preliminary analysis to create a distance matrix between Euler Characteristic Transforms using Matisse's "The Parakeet and the Mermaid" as an example

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ViniferaLeaves. An interactive graphic to explore the genetic basis of leaf shape in domesticated grape, Vitis vinifera.

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procrustes_leaves. A repository for morphometric analysis of leaf shape

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LeavesUnseen. Posting a written piece of work

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grapevine_ampelometry. The leaf shapes of 60 wine and table grape varieties are analyzed using Procrustean methods

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TeachingTools. Jupyter Notebook

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Plant_Genomics_MSU_REU_2021. A repository of the Plants & Python learning materials for the Plant Genomics @ MSU REU, 2021

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ray_casting_models. code to generate 3D plant models from 2D leaf images and perform ray casting simulations

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