Rare find

Alphafold2. A tool that predicts how proteins fold into their 3D shapes.

github.com/lucidrains/alphafold2
by @lucidrains

Vaya's read on this project

Problem, audience, market, and the verdict — sign in to see it.

Updates

July 2022
  • Release —v0.4.32
  • unnecessary, pytorch native softmax is numerically stable
September 2021
  • readme
August 2021
  • Release —0.4.31
  • zero init all branch output linear layers
  • do not detach rotations on last iteration
  • Release —0.4.30
  • 0.4.30
  • Make sure random_tokens is on correct device (#96)
  • Release —0.4.29
  • properly mask for structure module
  • Release —0.4.27
  • Release —0.4.26
  • make sure outermean can be masked for padding in msa rows, and also f…
  • link to arxiv insights
  • Release —0.4.25
  • fix quaternion update
  • Release —0.4.24
  • use stable softmax in attention
  • Release —0.4.23
  • release checkpointing for evoformer
  • do checkpointing for the entire evoformer
  • Release —0.4.22
  • bug
July 2021
  • remove sparse attention
  • cleanup axial attention, since we are no longer mixing row and column…
  • add stop gradient to the rotations, as done for stability, as in the …
  • add rel pos emb
  • add recycling logic and some more cleanup
  • keep fixing