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Zhuoqing Fang

Expert
@zqfang

Computational genomics and machine learning with graphs

GSEApy. Gene Set Enrichment Analysis in Python

706

QPCR. Calculate the Delta_Ct, Delta_Delta_Ct , Fold Changes and Student's t-tests from qRT-PCR experiment

27

YOLOv3_CPP. YOLOv3 C++

17

snakeflow. bioinfo workflow based on snakemake

15

drugai. Graph Neural Networks for Drug Efficacy Prediction

12

MuDataSeurat. .h5mu files interface for Seurat

10

GNNHap. Graph neural network for prioritizing casual genes from Mouse GWAS

8

haplomap. Haplotype-based computational genetic mapping (HBCGM) for inbred population

7

LeetCode. :pencil: Python / C++ 11 Solutions of All 468 LeetCode Questions

6

scBokeh. scRNA-seq Data Visualization with Bokeh

4

zqfang.github.io. My Computational Genomics Playground

3

chromatogram. Python

3

fluff. Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing experiments.

2

neoepitope. Neoantigen discovery pipelines with deep learning ( Immunopeptidome)

2

torchSV. A pytorch model for genotyping deletion based on given regions

1

ChIP-seq. ChIP-seq Scripts druing my PhD training

1

single-cell-bioinformatics-scrm-2016. Single cell bioinformatics class at the Sanford Consortium for Regenerative Medicine (SCRM) in 2016

1

ChIP-seq-analysis. ChIP-seq analysis notes from Tommy Tang

1

awesome-deep-learning. A curated list of awesome Deep Learning tutorials, projects and communities.

1

IXCpp. Interactive C++ for Data Analysis

1

bioconda-recipes. Conda recipes for the bioconda channel.

1

pyBEER. Jupyter Notebook

1

fastwilcox. Fast Wilcoxon and auROC in Python

1