Yohsuke T. Fukai

m2stitch. MIST-inspired microscope image stitching package

laptrack. Particle tracking by solving linear assignment problem.

microscopy_shadow_correction_stitching. Snakemake workflow for shadow correction and stitching of Zeiss CZI files

MicroTailor. A tweakable microscopy image stitching library for n-dimensional data

scikit-image. Image processing in Python

Ising_simulator. A simple simulator for the Ising model for exhibition / demonstration

microflow. Nextflow, Jupyter and papermill-based notebooks and workflow for microscopy image preprocessing.

napari-travali-old. Cell track editor based on napari

napari-laptrack. Tracking particles in Napari, using the LapTrack library

pycziutils. A tiny utility module to parse Zeiss CZI files in Python through python-bioformats.

arboretum. Track and lineage visualization with btrack, LapTrack and Napari

napari-travali. Track validator on napari (version 3 on tracksdata)

microscopy_image_segmentation. Image segmentation / summarization workflow for zarr images.