Theo Sanderson

firehose. The Bluesky firehose as a windows 95 screensaver

taxonium. A tool for exploring large trees in the browser

chronumental. Estimating time trees from very large phylogenies

Codon2Nucleotide. JavaScript

gensplore. Lightweight genome browser for microbial genomes

tube_checkout. Open-source hardware for tube handling and barcode scanning with OT2 robot

adhoc_covid. HTML

mixology. Buffer making tool

bsky-follows. JavaScript

hospitalmedicines. JavaScript

deeperseq. Browse FASTQs for SARS-CoV-2 genomes from the SRA/ENA

PlasmoTron. Semi-automated culture of malaria parasites

genomium. A portal for a set of microbial sequence tools

add_biosample_metadata_to_fastqdl_json. Adds biosample metadata from ENA to fastq-dl downloads

armadillin. Python

Advanced_OT2. Jupyter Notebook

covid_uk_data_timestamped. UK official COVID stats archived at various points in time, allowing reporting date and specimen date to be linked.

flowalign. Wrapper for minimap2 for alignment of viral sequences to reference

malaria_phenotype_papers. Using a GPT3-based classifier to identify malaria papers reporting phenotypes

bsky-users. JavaScript

mpxTree. Shell

OpenRoboticIncubator. An open-source hardware robotic incubator.

molnupiravir. Jupyter Notebook

OTWebControl. Python

sgtf-downsampling.

ppx_version_comparator. JavaScript

SARS-CoV-2-mutations-of-interest.

mov_streamlit. Python

OpentronsTerminalCalibration. Lightweight python script to calibrate position of equipment in an OpenTrons OT1 robot, rather than relying on the GUI app

nextclade_data. Datasets for https://github.com/nextstrain/nextclade

theo.io. Personal website

genbank_api. CSS