Thomas Hackl

gggenomes. A grammar of graphics for comparative genomics

minidot. Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2

proovframe. frame-shift correction for long-read (meta)genomics

seq-scripts. scripts for sequence and feature conversion, annotation, analysis ...

detectEVE. Find endogenous viral elements in genomes

treemmer-animate. R

cross-species-scaffolding. Super-scaffolding of draft genome assemblies with in silico mate-pair libraries derived from (closely) related references

ggworldmap. Visualize Global-Scale Quantitative Data on World Maps with Projection and Shifted Central Meridian

thacklr. A Collection of R Functions and Snippets I Often Use

host-phage-tRNA-att-finder. Link phages and potential host by finding shared attachment sites for prophage integration

pro-tycheposons. Supplementary code and data for mobile genetic elements in Prochlorococcus

thackl.github.io. Source code of my homepage & blog

kmer-scripts. scripts for working with kmers - plots, filter, ...

google-sync. Scripts for syncing local tsv files with google spreadsheets

lecture-variant-calling. Variant-Calling-Example

mbc-prime. Find group-specific primer binding sites for amplicon metabarcoding

proovframe-benchmark. Benchmark data sets used to assess proovframe - frame-shift correction for long-read (meta)genomics

cb-emales. Supplementary code and data for endogenous mavirus-like elements in Cafeteria burkhardae genomes

dropbox-dual-account-setup. Multiple dropbox accounts on linux

simons-metagenome-data-descriptor-map-figure. Jupyter Notebook

UTIr-genome-pipeline. Assembly and annotation pipeline for UTIr project isolates