Andrea Telatin

seqfu2. :rocket: seqfu - Sequece Fastx Utilities

bamtocov. 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

covtobed. ⛰ covtobed | Convert the coverage track from a BAM file into a BED file

gan. 📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria

nextflow-example. A simple DSL2 workflow: tutorial

learn_bash. Toy files and training material to introduce Linux to molecular biologists

microbiome-bioinformatics. Jekyll Template - Mediumish

porfast. ⚡pORFast - Paired-end ORF Fast extraction

covtools. Nim

qax. Qiime2 Artifact eXtractor

getreads. Python

singularities. Scripts and notes for singularity containers used for bioinformatics analyses

nextseq500-tools. Tools to deal with Illumina NextSeq500 sequences

cdhit-parser. Python

cleanup. Nextflow pipeline to preprocess metagenomics reads

nim-for-bioinformatics. Notes on the Nim programming language, with specific examples for bioinformatic applications

FASTX-Abi. Perl module to convert Sanger traces (chromatograms) to FASTQ

nim-stuff. Exploring NIM

bioinfo. Misc scripts for routine bioinformatics tasks. Plus some Perl modules.

vsearch_example. An example of 16S analysis using VSEARCH

learnperl. Scripts used for Bash/Perl training sessions

FASTX-Reader. [FASTX::Reader] Perl module to parse FASTQ files, without depending on BioPerl

tii. Like 'tee', but for PasteBin.com

Awesome-Bioinformatics. A curated list of awesome Bioinformatics libraries and software.

proch-n50. Perl Module and Utility to calculate N50

course-in-a-box. An open-source project for creating online courses, built by P2PU

lotus-tutorial. Tutorial on 16S analysis using the Lotus pipeline

ml-workshop-2023. Machine Learning with Python

amplicorius. AmpliCoriuS - Amplicon Core Scripts

factotus. The OTUs Factotum

anvio. An analysis and visualization platform for 'omics data

fasten. :construction_worker: Fasten toolkit, for streaming operations on fastq files