Stephen Nayfach

MIDAS. An integrated pipeline for estimating strain-level genomic variation from metagenomic data

MGV. Supporting code for uncultivated gut virus manuscript

MAGpurify. Improvement of metagenome-assembled genomes

MicrobeCensus. MicrobeCensus estimates the average genome size of microbial communities from metagenomic data

UHGV. Unified Human Gut Virome Catalog

IGGdb. Database of genomes integrated from the gut microbiome and other environments

IGGsearch. Metagenomic species profiling with enhanced coverage of the human gut microbiome

UHGV-classifier. Taxonomic classification of human gut viruses

AssemblyEvaluator. A simple tool for evaluating a metagenomic assembly