Michael Strasser

riemannian_latent_space. Riemannian metrics to measure distances in latent space of VAEs

pyDiffusionMaps. Diffusion maps for python

stacked_denoising_autoencoders. trying to redo the Vincent2010 paper

rnaseqtools. Python code for handling various aspects of RNAseq data

nf-10x-kallisto. kallisto quantification of a cellranger-processed 10x experiment (its bamfile)

nf-10x-pathseq. Nextflow pipeline for pathogen discovery via gatk-pathseq on scRNAseq

cNMF. Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

pyHematoFatePrediction. Python code to [Buggenthin2017]

beataml2-pipeline. Kedro pipeline to generate a muon-object from BeatAML2 data