Chris Chen

MathNotes. Python

ehrbase. An open source openEHR server

krd-experiment. Python

hako. A Modern, High-performance, Low-alloc Binary Serialization Library for Clojure with 0 dependencies

MedWeave_Harmonize. Python

CLIProxyAPI. Wrap Antigravity, ChatGPT Codex, Claude Code, Grok Build as an OpenAI/Gemini/Claude/Codex compatible API service, allowing you to enjoy the free Gemini 3.1 Pro, GPT 5.6 Series, Grok 4.5, Claude model through API

hasch. Cross-platform (JVM and JS atm.) edn data structure hashing for Clojure.

pathom3. Interface with complex data via graph mapping.

pathom. Pathom is a Clojure(script) engine for processing EQL requests.

scikit-tda. Topological Data Analysis for Python🐍

diffrax. Numerical differential equation solvers in JAX. Autodifferentiable and GPU-capable. https://docs.kidger.site/diffrax/

torchcde. Differentiable controlled differential equation solvers for PyTorch with GPU support and memory-efficient adjoint backpropagation.

torchsde. Differentiable SDE solvers with GPU support and efficient sensitivity analysis.

pysheaf. Python Cellular Sheaf Library

open. 🌱 Growing small systems in public

hades. A FHIR terminology server.

opencode-ralph-loop. Minimal Ralph Loop plugin for opencode - auto-continues until task completion

allium. Velocity through clarity

elle. Black-box transactional safety checker based on cycle detection

quiver. A modern commutative diagram editor for the web.

openmed. Local-first healthcare AI: clinical NER & HIPAA PII de-identification that runs 100% on-device. 2,200+ medical models, 21 languages, Apple MLX + Python, no cloud, no patient data leaving your network. Apache-2.0

PhysicianBench. The benchmark tasks and evaluation harness for "PhysicianBench: Evaluating LLM Agents in Real-World EHR Environments".

again. A retry library for Clojure

typedclojure. An optional type system for Clojure

yggdrasil. Git-like, causal space-time lattice abstraction over systems supporting this memory model.

eql. EQL is a declarative way to make hierarchical (and possibly nested) selections of information about data requirements. This repository contains the base specs and definitions for EQL parsing, AST, etc.

spindel. Cross-platform FRP runtime with a git-like memory model.

superv.async. This is a Clojure(Script) library that extends core.async with error handling and includes a number of convenience functions and macros.

katzen. Generalized algebraic theories and categorical programming for Clojure.

clj-3df. Clojure(Script) client for Declarative Dataflow.

ATLAS. Adaptive Test-time Learning and Autonomous Specialization

dirge. Dynamic Intent Resolution Grounding Engine

wavescope-mcp. Wavelet-based multi-resolution context management for LLMs via MCP

escapement. An agentic coding agent driven by statecharts.

zsxf. Incremental Query Computation

nucleus. An AI prompting framework

datahike. Versioned, fast, distributed Datalog engine for everyone.

replikativ. An open, scalable and distributive p2p infrastructure.

Understand-Anything. Graphs that teach > graphs that impress. Turn any code into an interactive knowledge graph you can explore, search, and ask questions about. Works with Claude Code, Codex, Cursor, Copilot, Gemini CLI, and more.

HRM-Text. HRM-Text is a 1B text generation model based on the HRM architecture, strengthened by task completion and latent space reasoning.

psi. Extensible AI Agent in Clojure

re-frame-query. Declarative data fetching and caching for re-frame inspired by tanstack query and redux toolkit query

re-frame-pair. A Skill for pair-programing with Claude Code on a re-frame app.

re-frame2. https://day8.github.io/re-frame2/

Qwen3.6. Qwen3.6 is the large language model series developed by Qwen team, Alibaba Group.

raster. Fast, functional numerical computing for Clojure/JVM.

ansatz. Dependently typed Clojure DSL with a Lean4 compatible kernel.

hitting-set. A Clojure library to find hitting sets and set covers

datascript-tutorial. Datascript and Datomic tutorial book

CQL. Categorical Query Language IDE

datsync. Datomic <-> DataScript syncing/replication utilities

datascript-transit. Transit handlers for DataScript database and datoms

andrej-karpathy-skills. A single CLAUDE.md file to improve Claude Code behavior, derived from Andrej Karpathy's observations on LLM coding pitfalls.

nrdatalog2sql. Converting Non-Recursive Datalog to SQL

ontop. Ontop is a platform to query relational databases as Virtual RDF Knowledge Graphs using SPARQL

nltk. NLTK Source

BlockNote. A React Rich Text Editor that's block-based (Notion style) and extensible. Built on top of Prosemirror and Tiptap.

simplexity. Tools for topological data analysis

aristotle. RDF, SPARQL and OWL for Clojure

javaplex. Persistent Homology and Topological Data Analysis Library

medical-mcps. A collection of MCP tools for AI agents to interact with major biomedical databases

graphify. Turn any codebase, with its docs, SQL schemas, configs, and PDFs, into a queryable knowledge graph. A /graphify skill for Claude Code, Cursor, Codex, and Gemini CLI: local deterministic AST parsing, every edge explained, no vector store.

pronto. A Python frontend to (Open Biomedical) Ontologies.

mcp-toolkit. a lib to build MCP clients and MCP servers in Clojure(script)

mcp-Loinc. This project provides a modular Python wrapper for the LOINC API, with an MCP server interface that integrates seamlessly with Claude Desktop for intelligent medical terminology lookup and standardization.

medicare-aus-mcp. JavaScript

hermes. A library and microservice implementing the health and care terminology SNOMED CT with support for cross-maps, inference, fast full-text search, autocompletion, compositional grammar and the expression constraint language.

meander. Tools for transparent data transformation

clj-async-profiler. Embedded high-precision Clojure profiler

missionary. A functional effect and streaming system for Clojure/Script

larql. Rust

editscript. A library to diff and patch Clojure/ClojureScript data structures

buddy. Security library for Clojure

graphthulhu. MCP server that gives AI full access to your Logseq or Obsidian knowledge graph. 39 tools for navigation, search, analysis, writing, decisions, journals, flashcards, and whiteboards.

libjulia-clj. Julia bindings for Clojure -- Currently somewhat unstable --

libpython-clj. Python bindings for Clojure

re-frame. A ClojureScript framework for building user interfaces, leveraging React

Simplicial-Attention-Networks. Official Repository for Simplicial Attention Networks

liteparse. A fast, helpful, and open-source document parser

opencode. The open source coding agent.

heretic. Fully automatic censorship removal for language models

DHGE. [AAAI 2023] Official resources of "DHGE: Dual-view Hyper-Relational Knowledge Graph Embedding for Link Prediction and Entity Typing".

ShrinkE. Code for Shrinking Embeddings for Hyper-relational Knowledge Graphs (ACL'23)

sHINGE. Source code for sHINGE

cats. Category Theory and Algebraic abstractions for Clojure and ClojureScript.

sci. Configurable Clojure/Script interpreter suitable for scripting and Clojure DSLs

sglang. SGLang is a high-performance serving framework for large language models and multimodal models.

jsonformer. A Bulletproof Way to Generate Structured JSON from Language Models

re-posh. Use your re-frame with DataScript as a data storage

awesome-category-theory. A curated list of awesome Category Theory resources.

Delphi. Modelling human health trajectories using generative transformers

awesome-clojure-llm. Concise, curated resources for working with the Clojure Programming and LLM base coding agents

Matryoshka. MCP server for token-efficient large document analysis via the use of REPL state

pytorch-topological. A topological machine learning framework based on PyTorch

TopoModelX. Topological Deep Learning

awesome-topological-deep-learning. A curated list of topological deep learning (TDL) resources and links.

PageIndex. 📑 PageIndex: Document Index for Vectorless, Reasoning-based RAG

tessera. Zig

pyHanko. pyHanko: sign and stamp PDF files

stencil. templating engine for DOCX and PPTX files

pdfboxing. Nice wrapper of PDFBox in Clojure

graphiti. Build Real-Time Knowledge Graphs for AI Agents

aws-api. AWS, data driven

cljc.java-time. java.time clojure clojurescript

Awesome-LLM-Constrained-Decoding. A curated list of papers related to constrained decoding of LLM, along with their relevant code and resources.

app-ideas. A Collection of application ideas which can be used to improve your coding skills.

chronos. dependency-free clojure(script) time library

fastmath. Fast primitive based math library

kixi.stats. A library of statistical distribution sampling and transducing functions

core.logic. A logic programming library for Clojure & ClojureScript

seismometer. AI model evaluation with a focus on healthcare

clj-smells-catalog. This repository catalogs code smells in Clojure, providing descriptions, examples and causes.

example-project. Clojure

banger-editor. (previously bangle-editor) Collection of higher level rich text editing tools. It powers the local only note taking app https://bangle.io

litellm-clj. A universal translator for LLM models

honeysql. Turn Clojure data structures into SQL

clara-rules. Forward-chaining rules in Clojure(Script)

xtdb-inspector. Web UI for inspecting XTDB (v1) database

helix. A simple, easy to use library for React development in ClojureScript.

hnswlib. Java library for approximate nearest neighbors search using Hierarchical Navigable Small World graphs

hnsw-clj. Native implementation of HNSW algorithms (pure-hnsw, pcaf, ivf-hnsw, p-hnsw)

BettaFish. 微舆：人人可用的多Agent舆情分析助手，打破信息茧房，还原舆情原貌，预测未来走向，辅助决策！从0实现，不依赖任何框架。

primock57. Dataset of 57 mock medical primary care consultations: audio, consultation notes, human utterance-level transcripts.

clojure-mcp. Clojure MCP

mcp-fhir-tools. A collection of tools for working with FHIR data, designed to be used with Large Language Models via the Model Context Protocol.

medical-mcp. Python

medical-mcp. A Model Context Protocol (MCP) server that provides comprehensive medical information by querying multiple authoritative medical APIs including FDA, WHO, PubMed, Google Scholar, and RxNorm

medical-mcp. An MCP server that provides comprehensive medical information by querying multiple authoritative medical APIs including FDA, WHO, PubMed, Google Scholar, and RxNorm

electric. Electric Clojure: full-stack differential dataflow for UI

differential-datalog. DDlog is a programming language for incremental computation. It is well suited for writing programs that continuously update their output in response to input changes. A DDlog programmer does not write incremental algorithms; instead they specify the desired input-output mapping in a declarative manner.

cozo. A transactional, relational-graph-vector database that uses Datalog for query. The hippocampus for AI!

datalevin. A simple, fast and versatile Datalog database

instructor-clj. instructor-clj is a Clojure lib to get structured output from LLMs

GLiNER2. Unified Schema-Based Information Extraction

deps-new. Create new projects for the Clojure CLI / deps.edn

clerk. ⚡️ Moldable Live Programming for Clojure

mangle. Go

malli. High-performance data-driven data specification library for Clojure/Script.

sheaf_HNN. Code for Sheaf Hypergraph Networks paper

guidance. A guidance language for controlling large language models.

agents-deep-research. An implementation of iterative deep research using the OpenAI Agents SDK

MedAgentBench. MedAgentBench: A Realistic Virtual EHR Environment to Benchmark Medical LLM Agents

grain. Build Reasonable Applications with Clojure in the World of Natural Language Programming

uix. Idiomatic ClojureScript interface to modern React.js

heideltime. A multilingual, cross-domain temporal tagger developed at the Database Systems Research Group at Heidelberg University.

agent-framework. A framework for building, orchestrating and deploying AI agents and multi-agent workflows with support for Python and .NET.

postgres. Postgres.js - The Fastest full featured PostgreSQL client for Node.js, Deno, Bun and CloudFlare

gantt. Open Source Javascript Gantt

MedDINOv3. MedDINOv3: How to adapt vision foundation models for medical image segmentation?

DeepHypergraph. A pytorch library for graph and hypergraph computation.

Clinical_ModernBERT. [arXiv 2025] Pre-training script for Clinical ModernBERT

clinicalBERT. repository for Publicly Available Clinical BERT Embeddings

tick. Time as a value.

ragtacts. RAG(Retrieval-Augmented Generation) for Evolving Data

datascript-mcp-server. 🚀 Datascript MCP Server

Selmer. A fast, Django inspired template system in Clojure.

eng-practices. Prismatic's Engineering Practices

datascript. Immutable database and Datalog query engine for Clojure, ClojureScript and JS

clojure-style-guide. A community coding style guide for the Clojure programming language

jupyter. An interface to communicate with Jupyter kernels.

OpenTSLM. OpenTSLM: Time-Series Language Models for Reasoning over Multivariate Medical Text- and Time-Series Data

cc. claude code system prompt

deepagents. The batteries-included agent harness.

ag-ui. AG-UI: the Agent-User Interaction Protocol. Bring Agents into Frontend Applications.

lkif-core. The LKIF Core Ontology of Basic Legal Concepts

rustlings. :crab: Small exercises to get you used to reading and writing Rust code!

WslNotifyd. WslNotifyd is an implementation of the Desktop Notifications Specification using Windows native functionality.

RAG-Anything. "RAG-Anything: All-in-One RAG Framework"

zodgres. Postgres.js + Zod

STream3R. Dynamic 3D Foundation Model using Causal Transformer. [ICLR 2026]

awesome-openvino. A curated list of OpenVINO based AI projects

moshi. Moshi is a speech-text foundation model and full-duplex spoken dialogue framework. It uses Mimi, a state-of-the-art streaming neural audio codec.

anki-simple-cloze-overlapper. Simple Cloze Overlapper template for Anki 2.1 (probably any version, as it's JavaScript-only)

treequest. A Tree Search Library with Flexible API for LLM Inference-Time Scaling

servers. Model Context Protocol Servers

markitdown. Python tool for converting files and office documents to Markdown.

cookbook. Examples and guides for using the Gemini API

edn-data. EDN parser and generator that works with plain JS data, with support for TS and node streams

medspacy. Library for clinical NLP with spaCy.

awesome-tiptap. ⚡ Delightful Tiptap packages and resources

whisper-finetuning. [WIP] Scripts for fine-tuning Whisper

awesome-biomedical-knowledge-graphs. A curated list of biomedical knowledge graphs and of resources for their construction.

morphemes. A practical python library for identifying morphemes.

VistA. OSEHRA VistA

transcriptionstream. turnkey self-hosted offline transcription and diarization service with llm summary

whisper-diarization. Automatic Speech Recognition with Speaker Diarization based on OpenAI Whisper

knowledgebase. JavaScript

Doknosis. Differential diagnosis calculator

MedLLMsPracticalGuide. [Nature Reviews Bioengineering🔥] Application of Large Language Models in Medicine. A curated list of practical guide resources of Medical LLMs (Medical LLMs Tree, Tables, and Papers)

dnd-timeline. dnd-timeline: A headless timeline library for React, based on dnd-kit

PrimeKG. Precision Medicine Knowledge Graph (PrimeKG)

awesome-mlops. :sunglasses: A curated list of awesome MLOps tools

make-real. Draw a ui and make it real

tldraw. Build infinite canvas apps in React with the tldraw SDK. World's best, top-most agent recommended #1 five star SDK.

system-design-101. Explain complex systems using visuals and simple terms. Help you prepare for system design interviews.

system-design-primer. Learn how to design large-scale systems. Prep for the system design interview. Includes Anki flashcards.

book-pr. Pull Requests and Code Review: Best Practices for Developers, from Junior to Team Lead.

gpt-researcher. An autonomous agent that conducts deep research on any data using any LLM providers

free-spaced-repetition-scheduler. A spaced repetition algorithm based on DSR model

fsrs4anki. A modern Anki custom scheduling based on Free Spaced Repetition Scheduler algorithm