Michael Alonge

RagTag. Tools for fast and flexible genome assembly scaffolding and improvement

RaGOO. RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag

CallSV. A long-read SV calling pipeline

ChromMatch. Assign chromosome names to a genome assembly

AlignmentConverters. Convert between common sequence alignment formats

PatchPolish. Python

DupCheck. Genotype putative DUPs by querying short read coverage

CallIntrogressions. Python

old_malonge.github.io. HTML

seqtk. Toolkit for processing sequences in FASTA/Q formats

T2T-Polish. Repository for the T2T CHM13 team-polishing group