ChakrabortyLab

quickmerge. A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.

svmu. A program to call variants from genome alignment

mscaffolder. A comparative genome scaffolding tool

mplotter. Creates publication quality dot plot using ggplot

dspr-asm. Contains scripts and programs used to generate assemblies and variants for the DSPR project

mlift. A mummer based genomic coordinate liftover tool

mito-finder. Assembling mitochondrial genomes from long molecule sequences

proberead. A light weight utility program to extract reads that span genomic intervals

Assembly-error. Methods and notes on how to detect assembly errors in long molecule based assemblies