Luo Lab at Northwestern University

Clinical-Longformer. Python

text_gcn_tutorial. A tutorial & minimal example (8min on CPU) for Graph Convolutional Networks for Text Classification. AAAI 2019

SOAR. R

AI_and_Data_Science_Year_In_Reviews.

SHINE. NeurIPS 2022 paper, SubHypergraph Inductive Neural nEtwork

autism_precision_medicine. Nature Medicine paper. A Multidimensional Precision Medicine Approach for Autism Subtype Identification.

PH-LLM. LLM for Public Health

seg_gcn. Segment graph convolutional neural network for relation classification. Paper in JAMIA.

3dmice. Missing data imputation for longitudinal multi-variable EHR data. Paper in JAMIA.

stdgcn. Python

mimic_imputation. Generating the imputation dataset for the DACMI 2019 challenge

panther. PANTHER: Pathway Augmented Nonnegative Tensor factorization for HighER-order feature learning. AAAI 2021

seg_cnn. Segment CNN for relation classification. Paper in JAMIA.

MLfairHF. Python

rangetree. Implementation of the fastest interval tree querying algorithm based on range tree data structure. Work on genomic and time intervals etc. Paper in Scientific Reports.

lapnlp. LISP Architecture for Portable Natural Language Processing. BIBM 2018.

scanmap. Supervised Confounding Aware NMF for Polygenic Risk Modeling. MLHC 2020.

twitter_vaccine_analysis. Python

LLM_Conference. LLM for conference organization

hnmf. Hybrid NMF to integrate genomic data and phenotype data for better patient subtyping. Paper in Bioinformatics.

NorthwesternIBDAtlas. R

gait.

rna_velocity. Jupyter Notebook

hf_etiology_data. Jupyter Notebook

Generative-and-Adjustable-Prior-Bayesian-Tensor-Factorization. Generative and Adjustable Prior Bayesian Tensor Factorization (GAP-BTF)