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Memphis

Kyle Smith

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@kylessmith

I am a Lead Bioinformatics Scientist at the St. Jude Research Hospital working in the area of cancer genomics.

dynamicTreeCut. Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.

44

ailist. Augmented Interval Tree implemented in Cython/C

20

SomVarIUS. Somatic variant identification from unpaired samples

16

MethylVerse. A suite of tools for methylation analysis

10

cfdna. Cell free DNA package

7

cbseg. Python implementation of Circular Binary Segmentation

4

linear_segment. Segmentation of linear data

4

SASE-hunter. Signatures of Accelerated Somatic Evolution hunter

4

SASE-mapper. Python

2

ngsfragments. Next Generation Fragment manipulation

2

hmmCNV. Copy Number Variation detection by HMM

2

bcpseg. Bayesian change point segmentation

1

python_circos. Python

1

hg19_info. Repository for hg19 genome annotations

1

hg38_info.

1

projectframe. A collection of DataFrame-like objects for the same project

1

pybedtools. Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

1

genome_info. Genome information

1

intervalframe. Interval Frame

1