jschnable

PANICLE. Python package for Genome-Wide Association Studies (GWAS). Implements GLM, MLM, FarmCPU, and BLINK with support for VCF, PLINK, HapMap, and CSV genotype formats.

parallelgwas. Code to help in running and analyzing eQTL and FarmCPU GWAS results across large numbers of traits.

pySpATS. Python implementation of Spatial Analysis of Field Trials with Splines (SpATS)

find_cns. find conserved non-coding sequences (CNS)