Jacques Serizay

tidyCoverage. R

HiContacts. Analyzing Hi-C data in R with HiCExperiment objects

HiCExperiment. Importing and manipulating Hi-C data in R

VplotR. R package to easily generate "V-plots" of paired-end sequencing data over regions of interest

OHCA. Orchestrating Hi-C analysis with Bioconductor

BiocBook. R

periodicDNA. periodicDNA R package

tinyMapper. Versatile "quick'n'dirty" mapper for genome-wide assays (e.g. ChIP-seq, ATAC-seq, RNA-seq, ...)

EBI_multiOmics_2020. Multi-omics data integration project designed and taught for the EMBL/EBI course: Introduction to Multiomics Data Integration and Visualisation (2020)

Bioc2024tidyworkshop. Repository for the Bioc2024 workshop on manipulating genomic data the tidy way.

DNAZooData. Gateway package to DNA Zoo-provided Hi-C maps and genome assemblies

GenomicCoordinates. R

BiocBook.tidyomics. BiocBook

HiCool. Processing Hi-C raw data within R

fourDNData. Gateway package to 4DN-provided Hi-C maps and derived genomic files

scATACseq-workshop. HTML

js2264.github.io. Personal website

OHCA.Bioc2023. Package demo for Bioconductor Conference 2023

scRNAseq_Physalia_2024. SCSS

scRNAseq_Physalia_2025. SCSS