Jody Phelan

TBProfiler. Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

tbdb. Standard database for the TBProfiler tool

NTM-Profiler. Profiling NTM WGS data

pathogen-profiler. This repository contains python classes and functions to quickly create a profiling tool for pathogen NGS data

genomics_course. JavaScript

ntmdb.

tb-ml. A simple tool for creating machine learning antimicrobial resistance prediction pipelines using Docker containers for M. tuberculosis

dengue-ngs. Python

host-pathogen. Python

tgv. JavaScript

tb-profiler-webserver. HTML

tgtools. Python

covid-profiler. HTML

ena-download. Python

tb-profiler-webdriver. Allows submitting of fastq files to a remote TB-Profiler server through a lightweight python API

pathogen_multiomics_course. JavaScript

gwas. Perl

lda. R

pathogenseq. Python

tbhgvs. Python

gwasPipeline. Python

tb_gwas. Python

pathogenseq-scripts. Perl

is6110. Python

tb-profiler-templates.

fastq-files. Python