Mikael Huss

deeplearning-biology. A list of deep learning implementations in biology

tabnet_fork. A fork of TabNet by Google Research

ascii-autoencoder. TensorFlow autoencoder implementation with ASCII visualization of reconstruction progress

bigpicture-twitterdiscourse. Companion repository to blog post "The big picture of public discourse" where we analyze Swedish Twitter data from 2015

TCGA_proteomics_tutorial. Tutorial on working with TCGA mass-spec proteomics (and RNA-seq) data.

valdata. Analysis of voting patterns in the Swedish general election 2014.

publicRNAseqdata. Code for the paper "Assessing the consistency of public human tissue RNA-seq data sets" (Danielsson at al, Briefings in Bioinformatics 2015, 16 (6): 941-949)

scilife-utilities. Helper scripts for NGS data processing

shiny-imageclassif-tfslim. Shiny version of code in blog post https://www.r-bloggers.com/image-classification-in-r-using-trained-tensorflow-models/

meetup-lime-examples. Notebooks with examples of using LIME on tabular, text and image data, presented at Machine Learning Stockholm 2017-09-27

scanBAM. Script that searches a set of BAM files for RNA-seq alignments that match a provided set of peptide coordinates.

lstm_sandbox. Testing LSTM architectures with Valohai

swedish-school-fires. Data on Swedish school fire cases 1998-2014

gene-expression-prediction. Case study for data carpentry class on predicting differential gene expression based on genomic features

bcbb. Useful bioinformatics code, primarily in Python and R