Govinda Kamath

ghostty. 👻 Ghostty is a fast, feature-rich, and cross-platform terminal emulator that uses platform-native UI and GPU acceleration.

openworker. Python

zsh-completions. Additional completion definitions for Zsh.

INSID3. [CVPR 2026 Oral] "INSID3: Training-Free In-Context Segmentation with DINOv3"

ohmyzsh. 🙃 A delightful community-driven (with 2,500+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, macOS, hub, docker, homebrew, node, php, python, etc), 140+ themes to spice up your morning, and an auto-update tool that makes it easy to keep up with the latest updates from the community.

DiffusionBlocks. DiffusionBlocks: Block-wise Neural Network Training via Diffusion Interpretation

cuda-oxide. cuda-oxide is an experimental Rust-to-CUDA compiler that lets you write (SIMT) GPU kernels in safe(ish), idiomatic Rust. It compiles standard Rust code directly to PTX — no DSLs, no foreign language bindings, just Rust.

Archon. The first open-source harness builder for AI coding. Make AI coding deterministic and repeatable.

colloquium. A markdown native slides tool for academics building with agents.

evalstats. Rigorous statistical analysis for LLM evaluations, from model and prompt comparisons to statistical inference resilient to LLM judge bias, including at small sample sizes. All defaults battle-tested in Monte Carlo simulations.

claude-code-nix. Always up-to-date Nix package for Claude Code with hourly updates from Anthropic's native releases

chafa. 📺🗿 Terminal graphics for the 21st century.

zsh-autocomplete. 🤖 Real-time type-ahead completion for Zsh. Asynchronous find-as-you-type autocompletion.

F3. [SIGMOD 2026] F3: The Open-Source Data File Format for the Future

Qwen3. Qwen3 is the large language model series developed by Qwen team, Alibaba Cloud.

deep-learning-with-python-notebooks. Jupyter notebooks for the code samples of the book "Deep Learning with Python"

bitchat. bluetooth mesh chat, IRC vibes

pmpp. Complete solutions to the Programming Massively Parallel Processors Edition 4

denoising-diffusion-pytorch. Implementation of Denoising Diffusion Probabilistic Model in Pytorch

container. A tool for creating and running Linux containers using lightweight virtual machines on a Mac. It is written in Swift, and optimized for Apple silicon.

equinox. Elegant easy-to-use neural networks + scientific computing in JAX. https://docs.kidger.site/equinox/

gonb. GoNB, a Go Notebook Kernel for Jupyter

parquet-tools. A utility to deal with Parquet data

ladybird. Truly independent web browser

deconstructor. A beautiful and interactive web application that deconstructs words into their meaningful parts and explains their etymology.

dioxus. Fullstack app framework for web, desktop, and mobile.

openslide. C library for reading virtual slide images

openslide-python. Python bindings to OpenSlide

devenv. Fast, Declarative, Reproducible, and Composable Developer Environments using Nix

kitty. If you live in the terminal, kitty is made for you! Cross-platform, fast, feature-rich, GPU based.

starship. ☄🌌️ The minimal, blazing-fast, and infinitely customizable prompt for any shell!

sprs. sparse linear algebra library for rust

rten. ONNX neural network inference engine

store-interval-tree. A balanced unbounded interval-tree in Rust with associated values in the nodes

bazel-diff. Performs Bazel Target Diffing between two revisions in Git, allowing for Test Target Selection and Selective Building

llvm-project. The LLVM Project is a collection of modular and reusable compiler and toolchain technologies.

grok-1. Grok open release

cellranger. 10x Genomics Single Cell Analysis

scan-rs. Single-cell analysis methods in Rust

piecewise_linear_fit_py. fit piecewise linear data for a specified number of line segments

Normalized_Trend_Filtering. Jupyter Notebook

covid19india-cluster. :microscope: Covid19 India Cluster Graph

spectral_jaccard_similarity. Python

glmnet_python. Jupyter Notebook

spectral_jaccard_similarity. Python

tabula-py. Simple wrapper of tabula-java: extract table from PDF into pandas DataFrame

tn_test. post-clustering differential expression test

kgraph. A library for k-nearest neighbor search

nndescent. Implementation of Efficient K-NN Graph Construction Algorithm NN-Descent in C++

scikit-learn. scikit-learn: machine learning in Python

banditlib. Multi-armed bandit simulation library

JSAT. Java Statistical Analysis Tool, a Java library for Machine Learning

perceptions. Perceptions of Probability and Numbers

eakmeans. Implementation of fast exact k-means algorithms

trimed. The trimed algorithm for obtaining the medoid of a set

deepvariant. DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

pyro. Deep universal probabilistic programming with Python and PyTorch

clustering_on_transcript_compatibility_counts. Clustering cells from single cell RNA seq assays

gonum. Gonum is a set of numeric libraries for the Go programming language. It contains libraries for matrices, statistics, optimization, and more

reflow. A language and runtime for distributed, incremental data processing in the cloud

Meddit. Jupyter Notebook

fitting-random-labels. Example code for the paper "Understanding deep learning requires rethinking generalization"

jupyterlab. JupyterLab computational environment.

seaborn. Statistical data visualization in Python

dendrosplit. Jupyter Notebook

lastools. Tools for processing DALIGNER .las files

minimap2. A versatile pairwise aligner for genomic and spliced nucleotide sequences

failures_of_DL. Python

readme2tex. Renders TeXy Math for Github Readme - No longer needed with official MathTex support on GH

tufte-latex. A Tufte-inspired LaTeX class for producing handouts, papers, and books

hingeassembler.github.io. HINGE website

PixelDTGAN. A torch implementation of "Pixel-Level Domain Transfer"

HINGE-analyses. Analysis accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution" http://genome.cshlp.org/content/early/2017/03/20/gr.216465.116.full.pdf

DAMAPPER. Long read to reference genome mapping tool

GFA-spec. Graphical Fragment Assembly (GFA) Format Specification

pacbio-14-nctc-assemblies. 14 NCTC samples for testing PacBio assemblers

FALCON_unzip. foo

DAVIEWER. C

tensorflow. An Open Source Machine Learning Framework for Everyone

DEXTRACTOR. Bax File Decoder and Data Compressor

TensorFlow-Examples. TensorFlow Tutorial and Examples for Beginners (support TF v1 & v2)

suffix-trees. Python implementation of Suffix Trees and Generalized Suffix Trees.

gephi. Gephi - The Open Graph Viz Platform

DALIGNER. Find all significant local alignments between reads

DevNet. The DevNet project on github stores the PacBio DevNet website.

DAMASKER. Module to determine where repeats are and make soft-masks of said

vimrc. The ultimate Vim configuration (vimrc)

data-science-sequencing.github.io. Web site for the class EE 372 : Data Science for High-Throughput Sequencing at Stanford

DASCRUBBER. Alignment-based Scrubbing pipeline

Bandage. a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

HINGE. Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"

hacker-scripts. Based on a true story