Giorgio Gonnella

gfaviz. Graphical interactive tool for the visualization of sequence graphs in GFA format.

gfapy. Gfapy: a flexible and extensible software library for handling sequence graphs in Python

rgfa. Ruby library for handling GFA files

textformats. Nim

attrtables. System for storing, a dynamic set of entity attributes in a database

fastsubtrees. Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

attr_hidden. Rails / ActiveRecord - Hide attributes in a model (particularly useful for Single Table Inheritance)

boxover_helper. A rails helper to make easier to use boxover javascript library (http://boxover.swazz.org)

genomeviewer. GenomeViewer is a webbased viewer for GFF3 genome annotations

ec_finder. EcFinder: Python library and script to fuzzy search an enzyme EC number from an enzyme name

snacli. Simplify writing dual use scripts for CLI and Snakemake

scp-open. Open and edit a file on a remote server connected by ssh

multiplug. Flexible multi-language plugin system for Python

prenacs. Batch computing and results storage system with provenance-tracking

rgfatools. (code moved to https://github.com/ggonnella/rgfa)

ruby_progress_bar. a simple progress bar to give some feedback in console based ruby scripts

egcwebapp. A web application for visualizing and editing EGC data

git-batch-op. allows to run git repository operations on a group of repositories

active_scaffold_list_filters. Filters for the Rails Active Scaffold Plugin