This is your work, valued

Cambridge, United Kingdom

Fernando Pérez-García

Elite
@fepegar

Senior Research Machine Learning Engineer at Microsoft Research Health Futures.

awesome-medical-imaging. Awesome list of software that I use to do research in medical imaging.

246

unet. "pip install unet": PyTorch Implementation of 1D, 2D and 3D U-Net architecture.

200

highresnet. PyTorch implementation of HighRes3DNet

56

vesseg. Brain vessel segmentation using 3D convolutional neural networks

44

SlicerPyTorch. This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.

38

staple. Python implementation of the STAPLE segmentation algorithm

35

SlicerParcellation. 3D Slicer modules for brain segmentation using deep learning.

32

SlicerTorchIO. 3D Slicer module for TorchIO.

25

resseg-ijcars. Code, data and model for Pérez-García et al. 2021, "A self-supervised learning strategy for postoperative brain cavity segmentation simulating resections"

19

miccai-educational-challenge-2019. Tutorial about combining PyTorch and NiftyNet for deep learning and medical image computing

15

optimally-oriented-flux. Python

15

resector. Algorithm to simulate resection surgery on brain MRI scans. Published in MICCAI 2020, extended in IJCARS.

14

SlicerEPISURG. 3D Slicer module to visualize the EPISURG dataset and segment postoperative brain resection cavities using deep learning.

12

resseg. RESSEG: automatic segmentation of postoperative brain cavities on 3D MRI using deep learning.

9

arduino-claw-crane. Collaboration with artist Estefanía B. Flores for her master's thesis at Goldsmiths, University of London.

9

gestures-miccai-2021. Code for "Pérez-García et al. 2021, Transfer Learning of Deep Spatiotemporal Networks to Model Arbitrarily Long Videos of Seizures, MICCAI 2021".

8

jvol. JPEG compression for 3D medical images.

8

creative-coding. p5.js examples

6

spotify-bpm-splitter. App to split a Spotify list in children playlists sorted by tempo

6

ndPytools. Little Python tool to manage Hamamatsu NDPI files

6

faces-map. Tool to embed faces in a 2D space using computer vision and machine learning

4

uv2conda. Create a Conda environment file from a Python project using uv.

4

miccai-educational-challenge-2020. My submission to the MICCAI Educational Challenge 2020.

4

arterys-models. Python

2

tf2pt. Jupyter Notebook

2

vesseg-models. Weights for digital subtraction angiography segmentation

2

orientations. List of resources to better understand medical images orientation.

2

azure-tools. azure-tools

1

telegram-gpt-bot. Use ChatGPT with your voice (in any language) and Telegram.

1

arduino-acronyms.

1

phd-thesis-template. TeX

1

advent-of-code-2022. My solutions for Advent of Code 2022

1

dcm2niiw. Thin wrapper of dcm2niix with Python and CLI interfaces.

1

docker-dgx-marc. Dockerfile

1

blockmatching-nipype. Python

1

scutoids. Python

1

slicer-blockmatching. 3D Slicer module as a GUI for blockmatching, a robust registration tool

1

highresnet-models.

1

pytorch-tests. Python

1

url-pdf-img. Python

1

SlicerAnimation. 3D Slicer module to animate objects using linear transforms

1

pyblock. Python

1

cast-coursework. Computer-assisted Surgery and Therapy coursework

1

slicer-niftyreg. Python

1