Davide Risso

bioc2016singlecell. Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor

SingleCellExperiment. Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.

zinbwave. Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave

RUVSeq. Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the official development version.

mbkmeans. K-means clustering for large single-cell datasets

learn2count. Structure learning based for zero-inflated negative binomial data

zinb_analysis. Data analysis and simulations for the ZINB-WaVE paper

ThrivingInBioinformatics. HTML

peixoto2015_tutorial. Tutorial to reproduce the analysis of Peixoto et al. (2015)

rnaseq_meetup. TeX

archive-RUVSeq. Archived version of RUVSeq

archive-SingleCellExperiment. This is the archived version of SingleCellExperiment with the history before Bioc submission.

archive-zinbwave. Archived version of the zinbwave package. All future development will be done on https://github.com/drisso/zinbwave

EDASeq. Clone of the Bioconductor repository for the EDASeq package, see https://bioconductor.org/packages/devel/bioc/html/EDASeq.html for the official development version.

bioc2019singlecell. TeX

archive-scRNAseq. Archived version of the scRNAseq Bioconductor package. All future development will be done at https://github.com/LTLA/scRNAseq

awst. Asymmetric Winsorization per Sample Transformation

x94. Code and data to reproduce the analysis of Naka et al.

awst_analysis. Code to reproduce the analyses of the AWST paper

archive-EDASeq. Archived version of EDASeq

scRNAseq. Clone of the Bioconductor repository for the scRNAseq package.

reproducible_research. Topics on reproducible research