David Koslicki

CMash. Fast and accurate set similarity estimation via containment min hash

MetaPalette. Metagenomic profiling and phylogenetic distances via common kmers

MinHashMetagenomics. Fast approximation of similarity for sets of very different sizes

EMDUnifrac. Computation of Unifrac using Earth Movers Distance

EMDeBruijn. Earth mover's distance between de Bruijn graphs

ARK. Aggregation of kmers: preprocessing step for kmer-based metagenomics taxonomic profiling techniques

Quikr. Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing.

CAMIKraken. A Dockerfile and wrappers for the Kraken metagenomic classifier

PressPurt. The core algorithm for the Koslicki & Novak JMB paper (2018)

TAMPA. A collection of tools to visualize CAMI profiling outputs

NCATS. Python

MedianUnifrac. Computing medians with respect to the UniFrac metric

MultiresolutionBloomFilters.

CAMIARKQuikr. The ARK+Quikr algorithm in a format for the CAMI competition

CommonKmers. Strain specific taxonomic profiling tool

FITS_focus_data. Extract FWHM, temp, focus positions, etc. from a directory of astronomical FITS files