dariober

ASCIIGenome. Text Only Genome Viewer!

cnv_facets. Somatic copy variant caller (CNV) for next generation sequencing

bioinformatics-cafe. Unsorted scripts for bioinformatics

SICERpy. Python wrapper around the popular ChIP-Seq peak caller SICER

excelToCsv. Command-line exporter of MS Excel files to CSV format

sympy-books. Maths textbook exercises implemented in SymPy

fxstat. Fast and easy stats for FASTA and FASTQ files

genomeGraphs. Command line program to visualize genomic data

quadratic-programming-deconvolution. A tutorial on quadratic programming for deconvolution of mixed cell populations using R

SequenceMatcher. Match query sequences against reference sequences

Illumina-450K-oxBS. Code accompanying the manuscript "Accurate measurement of 5-methylcytosine and 5-hydroxymethylcytosine in human cerebellum DNA by oxidative bisulfite on an array (OxBS-array)"

Java-cafe. A variety of bioinformatics programs written in Java

test-setup-travis. Sandbox to experiment set up scripts with Travis CI

deepTools. Tools to process and analyze deep sequencing data.

rebuilt-enhanced-methyl-seq. Code supporting the article "Enhanced Methylation Analysis by Recovery of Unsequenceable Fragments", McInroy et al., 2016