Colin Gillespie

efficientR. Efficient R programming: a book

poweRlaw. This package implements both the discrete and continuous maximum likelihood estimators for fitting the power-law distribution to data. Additionally, a goodness-of-fit based approach is used to estimate the lower cutoff for the scaling region.

rprofile. My .Rprofile set-up

efficient. The associated R package for Efficient R programming

benchmarkme. Crowd sourced benchmarking

roxygen2Comment. An Rstudio addin for adding and remove roygen2 comment

travis-examples. R

addinmanager. RStudio addin management made easy

rtypeform. An R interface to the 'typeform' API.

bmc-microarray. This repo contains the knitr code for the paper: Gillespie, C. S., et al, 2010. Analysing yeast time course microarray data using BioConductor: a case study using yeast2 Affymetrix arrays BMC Research Notes, 3:81.

raddins. A collection of RStudio addins

statslang. Slides and code for http://www.statslife.org.uk/events/events-calendar/eventdetail/284/-/statistical-computing-languages

renamer. R

In-silico-Systems-Biology. The latex and R code used the in stochastic simulation book chapter in "In silico Systems Biology: A systems-based approach to understanding biological processes".

benchmarkme-data. R package containing data from past benchmarks

dratTravis. Shell

talks. A list of recent talks

hybrid-pmcmc. Fortran

minifyHTML. A binding the Javascript-based HTML compressor/minifier

plmcmc. R

riemann-manifold. TeX

githubactions. My github actions playground. Will be deleted

voltagefit. R

expt_design. Code for Efficient construction of Bayes optimal designs for stochastic process models.

plbayes. Code and data from the paper Estimating the number of casualties in the American Indian war: a Bayesian analysis using the power law distribution

illumina-analysis. This repository contains the knitr/latex source, graphics and R code used in book chapter in Cockell, S, Bashton, M, Gillespie, CS. Bioconductor tools for microarray data analysis. In: Microarray Image and Data Analysis: Theory and Practice. CRC Press.

abcpmcmc. R

dotfiles. My dotfiles