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Computational Scientist at Berkeley Lab. Interests: AI / Ontologies / Bio. Projects: GO, Monarch, Alliance, OBOFoundry, NMDC. https://mungall.dev
sparqlprog. logic programming with SPARQL
49gosf2github. migrates tickets to GH from SF
39owljs. Javascript wrapper for the OWLAPI
38semantic-llama. A knowledge extraction tool that uses a large language model to extract semantic information from text
31blipkit. biological logic programming toolkit
28cltools. tools for common-logic
23json-flattener. Python library for denormalizing nested dicts or json objects to tables and back
12venomx. Vector Embedding Named Object Model indeX
12linkml-phenopackets. EXPERIMENTAL rendering of phenopackets in linkml
11sweet-obo-alignment. Alignment between ESIP SWEET and Open Bio Ontologies
9intervaldb. prolog wrapper for PyGR Nested Containment Lists (NCLs)
7