Christopher Chang

plink-ng. PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. This is a comprehensive update to it.

eigensoft. Experimental EIGENSOFT performance improvements.

stats. Standalone C/C++ exact statistical test functions.

flashpca_plink2. flashpca, modified to accept .pgen files.