César Leblanc

terminal-bench-science. Terminal-Bench Science: Evaluating AI Agents on Complex Real-World Scientific Workflows in the Terminal

pygbif. GBIF Python client

the-point-is-the-mask. [ICCV`2025, Oral] The point is the mask: scaling coral reef segmentation with weak supervision

Graphormer. Graphormer is a general-purpose deep learning backbone for molecular modeling.

Phylo_Inference. Python

captain-project. CAPTAIN is a Python program to optimize conservation planning based on biodiversity data and simulations using reinforcement learning

phylodeep. PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.

R-package. Repository of the R-packageGen3sis

cblindplot. R

scl_icbhi2017. PyTorch implementation of our work: Pretraining Respiratory Sound Representations using Metadata and Contrastive Learning (WASPAA 2023)

PlantNet-300K. [NeurIPS2021] A plant image dataset with high label ambiguity and a long-tailed distribution

wildlife-datasets. WildlifeDatasets: An open-source toolkit for animal re-identification

GeoPlant. Spatial Plant Species Prediction Dataset

deepmaxent. DeepMaxent Method for Species Distribution Modelling

PlantBERT. Learning the syntax of plant assemblages

academicpages.github.io. Github Pages template based upon HTML and Markdown for personal, portfolio-based websites.

AutomaticTraitExtraction. Jupyter Notebook

DinoVdeau. This repository contains all necessary components for training and evaluating DinoVd'eau model, a deep learning model fine-tuned for underwater multilabel image classification.

bhxiv-gen-pdf. Generate a PDF for BioHackrXiv.org

peerannot. Crowdsourcing library for Python

hdm-framework. A classification framework to enhance your habitat distribution models

GeoLifeCLEF. GeoLifeCLEF challenge toolkit and starter code

malpolon. Deep-SDM framework