This is your work, valued
I am passionate about image analysis through the use of Python and AI.
python_for_microscopists. https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1
4.4kpython_for_image_processing_APEER. https://www.youtube.com/playlist?list=PLHae9ggVvqPgyRQQOtENr6hK0m1UquGaG
487digitalsreeni-image-annotator. A python based GUI to annotate images and save annotations as COCO style JSON format.
256llm-vision-for-scientists. Jupyter Notebook
48vit-image-retrieval. Image Retrieval using Vision Transformers and FAISS
23bnsreenu. Config files for my GitHub profile.
163D-Organoid-Analysis. Jupyter Notebook
8TMA-dearray-stain-separation. Repository for the code used to support GASP-1 overexpression study
6AI-for-Digital-Pathology. Code repo for AI for Digital Pathology video series
4SynOrg. Parametric physics-based generator of synthetic 3D fluorescence organoid images with exact ground-truth label masks
2SynOrg-Analysis. Companion segmentation and feature extraction pipeline for SynOrg synthetic organoid images
2fake-manuscript-demo. A controlled demonstration of how easily a convincing fake scientific manuscript can be assembled using AI tools. Built and shared for educational purposes to highlight gaps in current scientific publishing integrity systems.
2Recommender-Systems. Python
1mlops-tutorial. Jupyter Notebook
1digitalpathology-voronoi-tessellation. Voronoi tessellation for tissue architecture quantification in H&E; mapping cell territories, region area, and packing density without deep learning
1digitalpathology-ripleys-k-clustering. Ripley's K function for spatial cell clustering detection from H&E
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