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Utrecht

Aldert Zomer

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@aldertzomer

Associate Professor at Utrecht University, Department of Infectious Diseases & Immunology. (meta)genomes, AMR, zoonotic bugs.

RFPlasmid. Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf

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vibrio_parahaemolyticus_genomoserotyping. Kaptive database of O and K antigen clusters of Vibrio parahaemolyticus

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Microbial-Genomics-2022. https://aldertzomer.github.io/Microbial-Genomics-2022/ Day 3 and 4 of the Microbial Genomics course 2022

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cgmlst. Fork of mlst of tseemann modified for cgmlst. Not very fast when used with organisms with a large number of allelic variants

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FastDeMe. A fast, easy solution for metagenomic data analysis - Forked from Sander Vermeulens repository, developed during his internship

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metapointfinder. finds and scores resistance causing mutations in long reads

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ResistNanome. A pipeline to extract microbiome and resistome profiles from Nanopore data from the internship of https://github.com/AStieva/

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