Anthony Gitter

single-cell-pseudotime. An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

adaptyvbio-egfr. Sequences from Adaptyv Bio’s EGFR Protein Design Competition

py-upset. A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.

ai-commentary-authors. "A renewed call for open artificial intelligence in biomedicine" author ordering

sdrem. Signaling and Dynamic Regulatory Events Miner

MultiPCSF. An implementation of the Multi-PCSF algorithm described in

my-manuscript. Test manuscript from https://github.com/manubot/rootstock

manubot-awesome-list. Proof of concept for creating awesome lists with Manubot

lightchem. Light-weight Machine Learning Framework for Drug Discovery

drug-class. comparing drug classification methods

proteomics-tutorial. HTML

dmol-book. Deep learning for molecules and materials book

ProteinDT. Python

rosetta. The Rosetta Bio-macromolecule modeling package.

Machine-learning-for-proteins. Listing of papers about machine learning for proteins.

Awesome-Biomolecule-Language-Cross-Modeling. Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey"

MolGAN. Tensorflow implementation of MolGAN: An implicit generative model for small molecular graphs (https://arxiv.org/abs/1805.11973)

OmicsIntegrator. This repository is the working directory for the garnet-forest bundle of python scripts for analyzing diverse forms of 'omic' data in a network context.

deep-review. A collaboratively written review paper on deep learning, genomics, and precision medicine

dragonn. Deep Neural Networks Tutorial for Regulatory Genomics

deepchem. Deep-learning models for Drug Discovery and Quantum Chemistry

learn-bioinformatics. List of resources for learning bioinformatics, from beginner to advanced

meo. Maximum Edge Orientation: Discovering Pathways by Orienting Edges in Protein Interaction Networks